The Gaggle is a framework for exchanging data between independently developed software tools and databases to enable interactive exploration of systems biology data. Software Integration Framework Database, Software Genome Browser The Gaggle Genome Browser is an open source software tool for visualizing high-density data plotted against coordinates on the genome. Tiling arrays, ChIP-chip, and high-throughput sequencing are a few potential use-cases.
Gaggle, genome browser, tiling arrays, ChIP-chip Visualization Genome Fingerprints Genome fingerprints enable ultrafast comparison of personal genomes. Analysis Software Computation, Genomics, Analysis, Privacy Genotype Fingerprints Genotype fingerprints enable fast and private comparison of genetic testing results for research and direct-to-consumer applications.
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Molecular Genetics Explorer is a package of applications that provide virtual laboratories with which students can AnimatLab is a tool that combines biomechanical simulation and biologically realistic neural networks. Oligo Analyzer is a powerful and easy-to-use tool to evaluate physical properties of primers. European Molecular Biology Open Biolearn is educative application that provides Biology science comprehensively and attractively.
He, M. Ellisman, J. Hone, R. Iyengar, and L. PLoS Comput Biol. Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability.
A 3D geometry of foot processes of a kidney podocyte, created based on an measurements from EM, is use to create a model of actin cytoskeletal regulation by the small GTPases RhoA and Rac1.
PMID Friend, J. Sayyad, R. Arasada, C. McCormick, J. Heuser, and T. Cytoskeleton Hoboken. Fission yeast Myo2: Molecular organization and diffusion in the cytoplasm. A VCell model was used to analyze fluorescence photobleaching experiments to characterize the diffusion of Myosin II in Schizosaccharomyces pombe.
For solving differential equations, as well as storing and sharing models, Virtual Cell provides free, remote solvers and storage servers available to a worldwide community of users. Virtual Cell was developed … to be a simple yet powerful tool to allow students and biologists with relatively little math background to perform computational modeling. Integrating fluorescent biosensor data using computational models.
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